A Phase 1-2, Double-Blind, MAD Study of ION440 in MDS

2023-507192-22-00 Protocol ION440-CS1 Phase I and Phase II (Integrated) - First administration to humans Authorised, recruiting

Start 24 Oct 2025 · Status Authorised, recruiting · 3 EU/EEA countries · 3 sites · Protocol ION440-CS1

Overview

Sponsor-declared trial summary

Phase Phase I and Phase II (Integrated) - First administration to humans
Status Authorised, recruiting
Participants planned 52
Countries 3
Sites 3

Methyl CpG binding protein 2 (MECP2) Duplication Syndrome (MDS)

To assess the safety and tolerability of ION440 (Part 1 and 2)

Key facts

Sponsor
Ionis Pharmaceuticals Inc.
Participant type
Pediatric, Patients
Age range
0-17 years, 18-64 years, 65+ years
Gender
Male
Therapeutic area
Phenomena and Processes [G] - Genetic Phenomena [G05]
Trial duration
24 Oct 2025 → ongoing
Decision date (initial)
2025-07-14
Transition trial
No
Low-intervention
No
Rare-disease indication
Yes
Vulnerable population
Yes
Funding sources
Ionis Pharmaceuticals Inc

External identifiers

EU CT number
2023-507192-22-00
WHO UTN
U1111-1303-4105
ClinicalTrials.gov
NCT06430385

Trial design

CTIS Part I — objectives, methods, condition coding

Main objective

Scope: Pharmacodynamic, Safety, Others, Pharmacokinetic

To assess the safety and tolerability of ION440 (Part 1 and 2)

Secondary objectives 1

  1. To characterize the pharmacokinetics of ION440 in the cerebrospinal fluid (CSF) and plasma (Part 1 and 2)

Conditions and MedDRA coding

Methyl CpG binding protein 2 (MECP2) Duplication Syndrome (MDS)

Eligibility criteria

Principal inclusion / exclusion criteria as submitted by sponsor

Inclusion criteria 7

  1. Part 1: Males aged ≥ 2 to ≤ 65 years, depending on specific cohort and group, at the time of informed consent. − Group A: ≥ 8 to ≤ 65 years − Group B: 2 to 7 years, inclusive
  2. Part 1: Participant has at least one parent or caregiver ≥ 18 years of age capable of providing informed consent (signed and dated) and able to attend all scheduled study visits and provide feedback regarding the participant’s symptoms and performance as described in the protocol, and able to comply with all study requirements and activities
  3. Part 1: Participant has a documented diagnosis of MDS, with genetic confirmation of MECP2 duplication.
  4. Part 1: Able to complete all study procedures, measurements and visits to support primary and secondary endpoints, and the caregiver/participant has adequately supportive psychosocial circumstances, in the opinion of the Investigator.
  5. Part 1: Is currently receiving stable doses of concomitant medications for at least 1 month prior to Screening.
  6. Part 2: Participants in ION440-CS1 Part 1/MAD who received at least one dose of Study Drug/Sham in Part 1/MAD, missed no more than 1 study visit, and attended the Followup visit (Visit 6).
  7. Part 2: All inclusion criteria in Part 1/MAD apply (participants will not be required to undergo Screening blood collections additional to those scheduled on Part 1/MAD Visit 6 [Day 253]).

Exclusion criteria 10

  1. Part 1: Confirmed (by repeat measurement) clinically significant vital sign or ECG abnormality at Screening including: a. Heart rate (HR) < 45 beats per minute b. QTcF > 450 milliseconds c. Blood pressure exceeding the 95th percentile for age, sex, and height plus 12 mmHg, or blood pressure meeting hypertension diagnostic criteria for children per European Society of Hypertension (ESH) guidelines for children and adolescents, or blood pressure > 140/90 mmHg d. Blood pressure below the 5th percentile for age, sex, and height per ESH guidelines for children and adolescents.
  2. Part 1: Documented diagnosis of severe MECP2 duplication including terminal duplication and/or translocation or MECP2 triplication OR clinical features associated with severe variant structure including (a) onset of seizures prior to aged 5 years (for those 5 years and above at signing of ICF), (b) oxygen dependence, and (c) microcephaly, IF MECP2 genetic structure information is unavailable.
  3. Part 1: Known brain or spinal disease that would interfere with the LP procedure, or CSF circulation or presence of other factors would affect the safety of the LP procedure.
  4. Part 1: Has any concomitant disease or condition or circumstance, or any finding at Screening that, in the opinion of the Investigator, makes the participant unsuitable for enrollment or that could interfere with the conduct of the study or that would pose an unacceptable risk to the participant in this study
  5. Part 1: Treatment with an investigational drug, biological agent, or device within 30 days of Screening, or 5 half-lives of investigational agent, whichever is longer.
  6. Part 1: Previous treatment with an oligonucleotide (including siRNA) within 4 months of Screening if single dose received, or within 12 months of Screening if multiple doses received (this exclusion does not apply to vaccines - both mRNA and viral vector vaccines are allowed including COVID-19). For centrally administered ASOs, a minimum of 12 months washout is required irrespective of the number of doses received.
  7. Part 1: Has experienced Status Epilepticus in the past 6 months.
  8. Part 1: Active infection requiring systemic antiviral or antimicrobial therapy that will not be completed prior to BL (Day 1).
  9. Part 1: Has a history of gene therapy or cell transplantation or any other experimental brain surgery.
  10. Part 2: Has developed any concomitant disease (e.g., gastrointestinal, renal, hepatic, endocrine, respiratory, or cardiovascular system disease) or condition or circumstance, or any finding during Part 1/MAD that, in the opinion of the Investigator, makes the participant unsuitable for continued treatment (e.g. could interfere with the conduct of the study or that would pose an unacceptable risk to the participant in this study).

Endpoints

Primary and secondary outcome measures (English text)

Primary endpoints 1

  1. Incidence of treatment-emergent adverse events (TEAEs) and clinically significant change from Baseline (BL) in vital signs, physical and neurological examination, laboratory assessments, and electrocardiogram (ECG) over the course of the study.

Secondary endpoints 2

  1. Maximum plasma concentration (Cmax), area under the concentration-time curve (AUC), elimination half-life (t½), and trough (pre-dose) and post-treatment ION440 concentrations, where appropriate
  2. ION440 trough (pre-dose) and post-treatment concentrations in CSF

Investigational products

Investigational medicinal products (IMPs), comparators, placebo, auxiliary

Test 1

ION440

PRD11124746 · Product

Active substance
ION440
Pharmaceutical form
INJECTION
Route of administration
INTRATHECAL USE
Authorisation status
Not Authorised
MA holder
IONIS PHARMACEUTICALS, INC.
Paediatric formulation
No
Orphan designation
No

Sponsors and contacts

Sponsor organisations, regulatory contacts, third parties

Ionis Pharmaceuticals Inc.

Sponsor organisation
Ionis Pharmaceuticals Inc.
Address
2855 Gazelle Court
City
Carlsbad
Postcode
92010-6670
Country
United States

Scientific contact point

Organisation
Ionis Pharmaceuticals Inc.
Contact name
Global Regulatory Affairs

Public contact point

Organisation
Ionis Pharmaceuticals Inc.
Contact name
Global Regulatory Affairs

Third parties 12

OrganisationCity, countryDuties
Clouds of Care
ORG-100047172
Gent, Belgium Other
Charles River Laboratories Edinburgh Limited
ORG-100012600
Tranent, United Kingdom Laboratory analysis
Sitero LLC
ORG-100047455
Coral Gables, United States Other, Code 5, Data management, E-data capture
Ionis Pharmaceuticals Inc.
ORG-100006101
Carlsbad, United States Laboratory analysis
Pyxant Labs Inc.
ORG-100044673
Colorado Springs, United States Laboratory analysis
Invicro LLC
ORG-100046990
New Haven, United States Other
Medpace Reference Laboratories LLC
ORG-100041727
Cincinnati, United States Other, Laboratory analysis, Code 5, Data management, E-data capture
Ambry Genetics Corp.
ORG-100044727
Aliso Viejo, United States Other
Icon Clinical Research Limited
ORG-100008322
Dublin 18, Ireland Code 8
Propharma Group LLC
ORG-100048652
Raleigh, United States Other, Code 5
Eresearchtechnology Inc.
ORG-100013039
Philadelphia, United States Code 14, Code 5, Data management, E-data capture
Chillibean Limited
ORG-100042592
London, United Kingdom Other, E-data capture

Locations

3 EU/EEA countries · 3 investigational sites

By country

CountryMS statusPlanned subjectsSites
Austria Ongoing, recruiting 4 1
France Ongoing, recruiting 6 1
Spain Authorised, recruiting 6 1
Rest of world
United States, Canada, United Kingdom, Australia
36

Investigational sites

Austria

1 site · Ongoing, recruiting
Kepler Universitaetsklinikum GmbH
Department for Pediatrics and Adolescent Medicine, Krankenhausstrasse 26-30, 4020, Linz

France

1 site · Ongoing, recruiting
Centre Hospitalier Universitaire De Dijon
Centre de Génétique, 14 Rue Paul Gaffarel, 21000, Dijon

Spain

1 site · Authorised, recruiting
Sant Joan De Deu Barcelona Hospital
Neurologia, Passeig De Sant Joan De Deu 2, 08950, Esplugues De Llobregat

Country notifications

Trial-start, recruitment-start, end and early-termination notifications submitted per Member State

Country Trial startTrial end Recruitment startRecruitment end Early termination
Austria 2025-12-03 2025-12-10
France 2025-10-24 2025-12-15
Spain 2026-03-17

Results and documents

Annex IV summary of results, Annex V layperson summary, and all documents registered in CTIS for this trial

Documents 34 files

Public protocol annexes, IB summaries, regulatory submissions and post-authorisation documents registered in CTIS.

TypeTitleVersion
Protocol (for publication) D1_Protocol 2023-507192-22_redacted amendment6
Recruitment arrangements (for publication) K1_Recruitement arrangements 1
Recruitment arrangements (for publication) K1_Recruitment arrangements 2
Recruitment arrangements (for publication) K1_Recruitment arrangements_FR 2
Subject information and informed consent form (for publication) ION440-CS1_ES_Future Research ICF_ES_Redacted 1
Subject information and informed consent form (for publication) ION440-CS1_ES_Sub-Study 1 ICF Part 1_ES_Redacted 2
Subject information and informed consent form (for publication) L1_ION440-CS1_AT_Site Contact Details_Austria NA
Subject information and informed consent form (for publication) L1_SIS and ICF_Archived Samples ICF_redacted 2
Subject information and informed consent form (for publication) L1_SIS and ICF_Caregiver ICF LTE Part 2 3
Subject information and informed consent form (for publication) L1_SIS and ICF_Caregiver ICF LTE Part 2_Redacted 8
Subject information and informed consent form (for publication) L1_SIS and ICF_Caregiver ICF LTE Part 2_Redacted 5
Subject information and informed consent form (for publication) L1_SIS and ICF_Caregiver ICF MAD Part 1 3
Subject information and informed consent form (for publication) L1_SIS and ICF_Caregiver ICF MAD Part 1_Redacted 8
Subject information and informed consent form (for publication) L1_SIS and ICF_Caregiver ICF MAD Part 1_Redacted 5
Subject information and informed consent form (for publication) L1_SIS and ICF_Caregiver PIS LTE Part 2_redacted 8
Subject information and informed consent form (for publication) L1_SIS and ICF_Caregiver PIS MAD Part 1_redacted 8
Subject information and informed consent form (for publication) L1_SIS and ICF_ICF LTE Part 2 3
Subject information and informed consent form (for publication) L1_SIS and ICF_ICF MAD Part 1_redacted 3
Subject information and informed consent form (for publication) L1_SIS and ICF_ICF_Pregnant Partner_clean 2
Subject information and informed consent form (for publication) L1_SIS and ICF_Main ICF LTE Part 2_Redacted 7
Subject information and informed consent form (for publication) L1_SIS and ICF_Main ICF MAD Part 1_redacted 8
Subject information and informed consent form (for publication) L1_SIS and ICF_Parent ICF LTE Part 2_Redacted 5
Subject information and informed consent form (for publication) L1_SIS and ICF_Parent ICF MAD Part 1_redacted 5
Subject information and informed consent form (for publication) L1_SIS and ICF_PIS LTE Part 2_redacted 8
Subject information and informed consent form (for publication) L1_SIS and ICF_PIS_MAD Part 1_redacted 8
Subject information and informed consent form (for publication) L1_SIS and ICF_PIS_Pregnant Partner_clean 3
Subject information and informed consent form (for publication) L1_SIS and ICF_Sub-Study 1 ICF Part I _redacted 3
Subject information and informed consent form (for publication) L1_SIS and ICF_Sub-Study 2 ICF Part I _clean 3
Subject information and informed consent form (for publication) L2_Clincierge_Avis de protection des donnees 1
Subject information and informed consent form (for publication) L2_Clincierge_PFD_Datenschutzhinweis 1
Synopsis of the protocol (for publication) D1_Protocol synopsis 2023-507192-22_EN_redacted amendment6
Synopsis of the protocol (for publication) D1_Protocol synopsis ES 2023-507192-22_ES_redacted amendment6
Synopsis of the protocol (for publication) D1_Protocol synopsis FR 2023-507192-22_FR_redacted amendment6
Synopsis of the protocol (for publication) D1_Protocol synopsis_AT_2023-507192-22_DE_Redacted amendment6

Application history

8 submissions — initial application plus substantial / non-substantial modifications

#TypeCodeSubmittedReference MSConclusionDecision date
1 INITIAL IN 2024-04-04 Spain Acceptable with conditions
2024-07-22
2024-07-23
2 SUBSTANTIAL MODIFICATION SM-1 2024-12-16 Spain Acceptable
2025-02-10
2025-02-12
3 SUBSEQUENT ADDITION OF MSC APP-3 2025-04-17 Acceptable
2025-02-10
2025-07-14
4 SUBSTANTIAL MODIFICATION SM-2 2025-08-07 Spain Acceptable
2025-09-22
2025-09-23
5 SUBSTANTIAL MODIFICATION SM-3 2025-12-16 Spain Acceptable
2026-03-20
2026-03-20
6 SUBSTANTIAL MODIFICATION SM-4 2026-04-23 Spain Acceptable 2026-06-01
7 NON SUBSTANTIAL MODIFICATION NSM-1 2026-06-03 Spain 2026-06-03
8 NON SUBSTANTIAL MODIFICATION NSM-2 2026-06-03 2026-06-03